Servers and storage for proteomics data processing

The Proteomics Resource maintains dedicated computing hardware for data processing and analysis. Search results are typically processed through the Trans-Proteomic Pipeline; see the Tools page for the software available on these systems.

UWPR computing resources (as of 10/2024)

  • Two (2) Dell PowerEdge R6515 servers each with 256GB RAM, 480GB SSD, and dual AMD EPYC 7443P 2.85GHz CPUs (each with 24 cores, 48 threads, 128M Cache). These serve as cluster compute nodes (p001 and p002).
  • One (1) Dell PowerEdge R660 server with 128GB RAM, Intel Xeon Silver 4510 2.4GHz CPU (12 core, 24 threads, 30M Cache). This serves as an application and web server (tephra).
  • 33TB of enterprise class storage with NFS (Linux) and SMB (Windows) connectivity.
  • The UWPR also has access to UW Genome Sciences cluster computing resources. This includes (A) one compute node with dual Intel Xeon Gold 6330N 2.2GHz CPUs (each with 28 cores, 56 threads, 42MB cache), 512GB RAM, 890GB local storage; (B) two compute nodes with dual Intel Xeon Silver 4316 2.3GHz CPUs (each with 20 cores, 40 threads, 30MB cache), 256GB RAM, 890GB local storage; and (C) three compute nodes with Intel Xeon E5-2680 2.5GHz CPUs (8 cores, 16 threads, 20MB cache), 256GB RAM, 930GB local storage.