Support for the publications involves either instrument access, computational analysis, consultation with lab or computational staff, etc. It is our policy that key collaborator(s) within the UWPR share in co-authorship of any manuscripts that are the result of work performed at the Resource. Minimally, the Proteomics Resource should always be acknowledged as follows in publications:

This work is supported in part by the University of Washington’s Proteomics Resource (UWPR95794).

2022

  • Conditional Fragment Ion Probabilities Improve Database Searching for Nonmonoisotopic Precursors. O'Brien JJ, Gadzuk-Shea M, Seitzer PM, Rad R, McAllister FE, Schweppe DK. J Proteome Res. 2022 Nov 22. PMID: 36414539
  • Protein kinase R dependent phosphorylation of α-synuclein regulates its membrane binding and aggregation. Reimer L, Gram H, Jensen NM, Betzer C, Yang L, Jin L, Shi M, Boudeffa D, Fusco G, De Simone A, Kirik D, Lashuel HA, Zhang J, Jensen PH. PNAS Nexus. 2022 Nov 16. PMID: 36712380
  • The ProteomeXchange consortium at 10 years: 2023 update. Deutsch EW, Bandeira N, Perez-Riverol Y, Sharma V, Carver JJ, Mendoza L, Kundu DJ, Wang S, Bandla C, Kamatchinathan S, Hewapathirana S, Pullman BS, Wertz J, Sun Z, Kawano S, Okuda S, Watanabe Y, MacLean B, MacCoss MJ, Zhu Y, Ishihama Y, Vizcaíno JA. Nucleic Acids Res. 2022 Nov 12. PMID: 36370099
  • Coisolation of Peptide Pairs for Peptide Identification and MS/MS-Based Quantification. Smith IR, Eng JK, Barente AS, Hogrebe A, Llovet A, Rodriguez-Mias RA, Villén J. Anal Chem. 2022 Nov 8. PMID: 36306373
  • Extracellular vesicles from gastric epithelial GES-1 cells infected with Helicobacter pylori promote changes in recipient cells associated with malignancy. Gonzalez MF, Burgos-Ravanal R, Shao B, Heinecke J, Valenzuela-Valderrama M, Corvalan AH, Quest AFG. Front Oncol. 2022 Oct 12. PMID: 36313672
  • Proteomic response of early juvenile Pacific oysters (Crassostrea gigas) to temperature. Crandall G, Thompson RE, Eudeline B, Vadopalas B, Timmins-Schiffman E, Roberts E. PeerJ 2022 Oct 4. PMID: 36262416
  • Effect of Selective Androgen Receptor Modulator on Cholesterol Efflux Capacity, Size, and Subspecies of HDL. Particles Guo W, Pencina KM, Furtado JD, Sacks FM, Vaisar T, Cheng M, Sniderman AD, Page ST, Bhasin S. J Endocr Soc. 2022 Jun 28. PMID: 35822201
  • Transitioning global change experiments on Southern Ocean phytoplankton from lab to field settings: Insights and challenges. Boyd PW, Doney SC, EgginsS, Ellwood MH, Fourquez M, Nunn BL, Strzepek R, Timmins-Schiffman E. Limnology and Oceanography 2022 Jun 25. PMID: Wiley
  • 10,12-Conjugated linoleic acid supplementation improves HDL composition and function in mice. Vaisar T, Wang S, Omer M, Irwin AD, Storey C, Tang C, den Hartigh LJ. J Lipid Res. 2022 Jun 15. PMID: 35714730
  • Osmotic Processor for Enabling Sensitive and Rapid Biomarker Detection via Lateral Flow Assays. Chen SY, Wu AY, Lunde R, Lai JJ. Front Bioeng Biotechnol. 2022 Jun 1. PMID: 35721843
  • Structural dynamics reveal isolate-specific differences at neutralization epitopes on HIV Env. Hodge EA, Naika GS, Kephart SM, Nguyen A, Zhu R, Benhaim MA, Guo W, Moore JP, Hu SL, Sanders RW, Lee KK. iScience. 2022 May 23. PMID: 35677643
  • Three interacting regions of the Ndc80 and Dam1 complexes support microtubule tip-coupling under load. Flores RL, Peterson ZE, Zelter A, Riffle M, Asbury CL, Davis TN. J Cell Biol. 2022 May 2. PMID: 35353161
  • Pulmonary surfactant protein B carried by HDL predicts incident CVD in patients with type 1 diabetes. Shao B, Snell-Bergeon JK, Pyle LL, Thomas KE, de Boer IH, Kothari V, Segrest J, Davidson WS, Bornfeldt KE, Heinecke JW. J Lipid Res 2022 Apr;63. PMID: 35300983
  • Structure-guided changes at the V2 apex of HIV-1 clade C trimer enhance elicitation of autologous neutralizing and broad V1V2-scaffold antibodies. Sahoo A, Hodge EA, LaBranche CC, Styles TM, Shen X, Cheedarla N, Shiferaw A, Ozorowski G, Lee WH, Ward AB, Tomaras GD, Montefiori DC, Irvine DJ, Lee KK, Amara RR. Cell Rep. 2022 Mar 1. PMID: 35235790
  • Discovery and Visualization of Uncharacterized Drug-Protein Adducts Using Mass Spectrometry. Riffle M, Hoopmann MR, Jaschob D, Zhong G, Moritz RL, MacCoss MJ, Davis TN, Isoherranen N, Zelter A. Anal Chem. 2022 Mar 1. PMID: 35184559
  • Conformational flexibility of apolipoprotein A-I amino- and carboxy-termini is necessary for lipid binding but not cholesterol efflux. Bedi S, Morris J, Shah A, Hart RC, Jerome WG, Aller SG, Tang C, Vaisar T, Bornfeldt KE, Segrest JP, Heinecke JW, Davidson WS. J Lipid Res. 2022 Mar;63. PMID: 35051413
  • Shotgun Proteomics Identifies Active Metabolic Pathways in Bleached Coral Tissue and Intraskeletal Compartments. Axworthy, Jeremy B; Timmins-Schiffman, Emma; Brown, Tanya; Rodrigues, Lisa J; Nunn, Brook L. Frontiers in Marine Science. 2022 Feb 14. Link
  • Cryo-ET of Env on intact HIV virions reveals structural variation and positioning on the Gag lattice. Prasad VM, Leaman DP, Lovendahl KN, Croft JT, Benhaim MA, Hodge EA, Zwick MB, Lee KK. Cell 2022 Feb 4. PMID: 35123651