Support for the publications involves either instrument access, computational analysis, consultation with lab or computational staff, etc. It is our policy that key collaborator(s) within the UWPR share in co-authorship of any manuscripts that are the result of work performed at the Resource. Minimally, the Proteomics Resource should always be acknowledged as follows in publications:

This work is supported in part by the University of Washington’s Proteomics Resource (UWPR95794).

2024

  • APOA2 increases cholesterol efflux capacity to plasma HDL by displacing the C-terminus of resident APOA1. Sarkar S, Morris J, You Y, Sexmith H, Street SE, Thibert SM, Attah IK, Hutchinson Bunch CM, Novikova IV, Evans JE, Shah AS, Gordon SM, Segrest JP, Bornfeldt KE, Vaisar T, Heinecke JW, Davidson WS, Melchior JT. J Lipid Res. 2024 Dec;65(12). PMID: 39490930
  • Reproductive resilience: pathways to gametogenic success in Montipora capitata after bleaching. Timmins-Schiffman E, Duselis E, Brown T, Axworthy JB, Backstrom CH, Riffle M, Dilworth J, Kenkel CD, Rodrigues LJ, Nunn BL, Padilla-Gamiño JL. Sci Rep. 2024 Nov 13. PMID: 39532979
  • Detection and Quantification of Drug-Protein Adducts in Human Liver. Zelter A, Riffle M, Shteynberg DD, Zhong G, Riddle EB, Hoopmann MR, Jaschob D, Moritz RL, Davis TN, MacCoss MJ, Isoherranen N. J Proteome Res. 2024 Nov 1. PMID: 39442081
  • A Framework for Quality Control in Quantitative Proteomics. Tsantilas KA, Merrihew GE, Robbins JE, Johnson RS, Park J, Plubell DL, Canterbury JD, Huang E, Riffle M, Sharma V, MacLean BX, Eckels J, Wu CC, Bereman MS, Spencer SE, Hoofnagle AN, MacCoss MJ. J Proteome Res. 2024 Oct 4. PMID: 39248652
  • Relationships between HDL subpopulation proteome and HDL function in overweight/obese people with and without coronary heart disease. Vaisar T, Babenko I, Horvath KV, Niisuke K, Asztalos BF. Atherosclerosis. 2024 Oct;397:118565. PMID: 39260003
  • RNA structures within Venezuelan equine encephalitis virus E1 alter macrophage replication fitness and contribute to viral emergence. Hickson SE, Hyde JL. PLoS Pathog. 2024 Sep 27. PMID: 39331659
  • High-Performance Workflow for Identifying Site-Specific Crosslinks Originating from a Genetically Incorporated, Photoreactive Amino Acid. Ulmer LD, Canzani D, Woods CN, Stone NL, Janowska MK, Klevit RE, Bush MF. J Proteome Res. 2024 Aug 2. PMID: 38968604
  • Comparative Analysis of Protein Quantification by the SomaScan Assay versus Orthogonal Methods in Urine from People with Diabetic Kidney Disease. Lopez LN, Durbin-Johnson B, Vargas CR, Ruzinski J, Goodling A, Mehrotra R, Vaisar T, Rocke DM, Afkarian M. J Proteome Res. 2024 Jul 5. PMID: 38965919
  • Removal of Exogenous Stimuli Reveals a Canalization of Circadian Physiology in a Vertically Migrating Copepod. Timmins-Schiffman E, Maas AE, Khanna R, Blanco-Bercial L, Huang E, Nunn BL. J Proteome Res. 2024 Jun 7. PMID: 38690632
  • A Workflow for Improved Analysis of Cross-Linking Mass Spectrometry Data Integrating Parallel Accumulation-Serial Fragmentation with MeroX and Skyline. Rojas Echeverri JC, Hause F, Iacobucci C, Ihling CH, Tänzler D, Shulman N, Riffle M, MacLean BX, Sinz A. Anal Chem. 2024 May 14. PMID: 38696819
  • A targeted proteomics method for quantifying plasma apolipoprotein kinetics in individual mice using stable isotope labeling. Shao B, Shimizu-Albergine M, Kramer F, Kanter JE, Heinecke JW, Vaisar T, Mittendorfer B, Patterson BW, Bornfeldt KE. J Lipid Res. 2024 Apr;65(4). PMID: 38490635
  • Sex differences in the associations of HDL particle concentration and cholesterol efflux capacity with incident coronary artery disease in type 1 diabetes: The RETRO HDLc cohort study. Costacou T, Miller RG, Bornfeldt KE, Heinecke JW, Orchard TJ, Vaisar T. J Clin Lipidol. 2024 Apr;18. PMID: 38320926
  • Flipped C-Terminal Ends of APOA1 Promote ABCA1-Dependent Cholesterol Efflux by Small HDLs. He Y, Pavanello C, Hutchins PM, Tang C, Pourmousa M, Vaisar T, Song HD, Pastor RW, Remaley AT, Goldberg IJ, Costacou T, Sean Davidson W, Bornfeldt KE, Calabresi L, Segrest JP, Heinecke JW. Circulation. 2024 Mar 5. PMID: 37961344
  • Epigenetic programming of host lipid metabolism associates with resistance to TST/IGRA conversion after exposure to Mycobacterium tuberculosis. Dill-McFarland KA, Simmons JD, Peterson GJ, Nguyen FK, Campo M, Benchek P, Stein CM, Vaisar T, Mayanja-Kizza H, Boom WH, Hawn TR. bioRxiv [Preprint]. 2024 Mar 4. PMID: 38464296
  • Diel metabolic patterns revealed by in situ transcriptome and proteome in a vertically migratory copepod. Maas AE, Timmins-Schiffman E, Tarrant AM, Nunn BL, Park J, Blanco-Bercial L. Mol Ecol. 2024 Mar;33. PMID: 38258354
  • A High-Throughput PIXUL-Matrix-Based Toolbox to Profile Frozen and Formalin-Fixed Paraffin-Embedded Tissues Multiomes. Mar D, Babenko IM, Zhang R, Noble WS, Denisenko O, Vaisar T, Bomsztyk K. Lab Invest. 2024 Jan;104. PMID: 37924947